FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane2_Index7_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22985984 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| AAAAA | 5752525 | 2.867641 | 5.079155 | 2 |
| GAAGA | 4967440 | 2.5892828 | 5.2230973 | 2 |
| CCAGG | 4795980 | 2.5730674 | 5.5167017 | 1 |
| CCTGG | 4799050 | 2.5601468 | 6.0341063 | 1 |
| CTTCT | 5062280 | 2.5535645 | 5.9059944 | 1 |
| AAGAA | 4961185 | 2.52896 | 5.1926627 | 2 |
| CTGGA | 4692765 | 2.4676008 | 9.292851 | 1 |
| TCCAG | 4538345 | 2.367646 | 5.4725156 | 2 |
| CTGCT | 4545630 | 2.3580291 | 5.2458553 | 1 |
| CTCCT | 4474870 | 2.3030784 | 7.4073086 | 1 |
| CTGGG | 4218050 | 2.2680266 | 8.705121 | 1 |
| CAGGA | 4224115 | 2.233809 | 5.611227 | 1 |
| CTTCA | 4387040 | 2.2255452 | 6.011657 | 1 |
| CTCCA | 4215000 | 2.181675 | 7.7618623 | 1 |
| CCCAG | 4061235 | 2.1617477 | 7.232525 | 1 |
| CAGAA | 4084235 | 2.112179 | 5.3025413 | 1 |
| CTCTG | 3937225 | 2.0424213 | 6.672715 | 1 |
| CTGGC | 3551375 | 1.8945502 | 5.50829 | 1 |
| TGGAA | 3610840 | 1.8715048 | 5.3695903 | 2 |
| CTGAA | 3637090 | 1.8702941 | 6.0351477 | 1 |
| CTTTT | 3687855 | 1.8232528 | 5.3383303 | 1 |
| CTCAG | 3339370 | 1.742143 | 6.441977 | 1 |
| CTGAG | 3311735 | 1.7414126 | 5.194907 | 1 |
| CTTTG | 3366625 | 1.7116787 | 5.395016 | 1 |
| CTGGT | 3209840 | 1.6782836 | 5.3260126 | 1 |
| CTTGG | 3150325 | 1.6471657 | 5.661005 | 1 |